Genome Meta Information: Mycobacterium tuberculosis SCAID 187.0 (GCA_001275565.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001275565.2 | ||
| HOMD Taxon-ID | HMT-0822 | ||
| Species Name (in use by HOMD) | Mycobacterium tuberculosis | ||
| Organism Name (as deposited) | HMT-822 Mycobacterium tuberculosis SCAID 187.0 | ||
| Strain or Isolate | SCAID 187.0 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium; s__Mycobacterium tuberculosis |
||
| Sequencing Technology | |||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 4,411,829 (bp) | ||
| GC Percentage | 65.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/275/565/GCA_001275565.2_ASM127556v2 | ||
| CDS | 4072 | ||
| Genes | 4128 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.91 % | ||
| CheckM Completeness | 97.72 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM127556v2 |
| GenBank Assembly Accession | GCA_001275565.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001275565.2 [NCBI] |
| BioSample | SAMN03921880 [NCBI] |
| BioProject | PRJNA291131 [NCBI] |
| Submitter | Scientific Center for Anti-infectious Drugs (SCAID) |
| Submission Date | 2015-07-24T07:11:23.450 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1773 |
| Isolation Source | sputum of patient with MDR-TB |
| Geo Location | Kazakhstan: Karagandy |
