Genome Meta Information: Actinomyces sp. HMT-414 F0588 (GCA_001278845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001278845.1 | ||
| HOMD Taxon-ID | HMT-0414 | ||
| Species Name (in use by HOMD) | Actinomyces sp. HMT-414 | ||
| Organism Name (as deposited) | HMT-414 Actinomyces sp. HMT-414 F0588 | ||
| Strain or Isolate | F0588 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces sp001278845 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 52 | ||
| Contigs |
|
||
| Total Sequence Length | 3,836,419 (bp) | ||
| GC Percentage | 71.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/278/845/GCA_001278845.1_ASM127884v1 | ||
| CDS | 3094 | ||
| Genes | 3166 | ||
| mRNA | 3166 | ||
| misc RNA | 14 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.09 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM127884v1 |
| GenBank Assembly Accession | GCA_001278845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001278845.1 [NCBI] |
| BioSample | SAMN04009745 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2015-08-24T20:13:28.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712122 |
| Isolation Source | Supragingival dental plaque, molar tooth |
| Geo Location | USA: Boston, MA |
