Genome Meta Information: Porphyromonas gingivalis Ando (GCA_001297745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001297745.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis Ando | ||
| Strain or Isolate | Ando | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 224 | ||
| Contigs |
|
||
| Total Sequence Length | 2,229,994 (bp) | ||
| GC Percentage | 48.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/297/745/GCA_001297745.1_ASM129774v1 | ||
| CDS | 1877 | ||
| Genes | 1940 | ||
| mRNA | 1940 | ||
| misc RNA | 11 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.6 % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 1.43 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM129774v1 |
| GenBank Assembly Accession | GCA_001297745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001297745.1 [NCBI] |
| BioSample | SAMD00040429 [NCBI] |
| BioProject | PRJDB4201 [NCBI] |
| Submitter | Lab. of Plant Genomics and Genetics, Department of Plant Genome Research, Kazusa DNA Research Institute |
| Submission Date | 2015-09-07T11:05:05.723 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | BCBV01 |
| NCBI TaxID | 837 |
| Isolation Source | |
| Geo Location | Japan |
