Genome Meta Information: Porphyromonas gingivalis 381 (GCA_001314265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001314265.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis 381 | ||
| Strain or Isolate | 381 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | 454 GS20 shotgun and paired-end reads | ||
| Genome Coverage | 49.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,378,872 (bp) | ||
| GC Percentage | 48.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/265/GCA_001314265.1_ASM131426v1 | ||
| CDS | 1993 | ||
| Genes | 2073 | ||
| mRNA | 2073 | ||
| misc RNA | 14 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.1 % | ||
| CheckM Contamination | 0.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM131426v1 |
| GenBank Assembly Accession | GCA_001314265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001314265.1 [NCBI] |
| BioSample | SAMN03656156 [NCBI] |
| BioProject | PRJNA276132 [NCBI] |
| Submitter | University of Florida |
| Submission Date | 2015-05-13T13:58:04.137 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1403335 |
| Isolation Source | |
| Geo Location | USA: Boston, MA, Forsyth Denta |
