Genome Meta Information: Rhodobacter capsulatus A52 (GCA_001402725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001402725.1 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus A52 | ||
| Strain or Isolate | A52 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 180 | ||
| Contigs |
|
||
| Total Sequence Length | 3,607,570 (bp) | ||
| GC Percentage | 66.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/402/725/GCA_001402725.1_ASM140272v1 | ||
| CDS | 3389 | ||
| Genes | 3471 | ||
| mRNA | 3471 | ||
| misc RNA | 26 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 98.55 % | ||
| CheckM Contamination | 1.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM140272v1 |
| GenBank Assembly Accession | GCA_001402725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001402725.1 [NCBI] |
| BioSample | SAMN04166236 [NCBI] |
| BioProject | PRJNA298689 [NCBI] |
| Submitter | Istanbul Technical University, Institute of Science |
| Submission Date | 2015-10-14T09:37:19.763 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LLVV01 |
| NCBI TaxID | 1061 |
| Isolation Source | |
| Geo Location | Turkey |
