Genome Meta Information: Microbacterium ginsengisoli Leaf347 (GCA_001423805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001423805.1 | ||
| HOMD Taxon-ID | HMT-0185 | ||
| Species Name (in use by HOMD) | Microbacterium ginsengisoli | ||
| Organism Name (as deposited) | HMT-185 Microbacterium ginsengisoli Leaf347 | ||
| Strain or Isolate | Leaf347 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium; s__Microbacterium ginsengisoli |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,942,136 (bp) | ||
| GC Percentage | 70.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/423/805/GCA_001423805.1_Leaf347 | ||
| CDS | 2807 | ||
| Genes | 2871 | ||
| mRNA | 2871 | ||
| misc RNA | 7 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.89 % | ||
| CheckM Contamination | 1.04 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Leaf347 |
| GenBank Assembly Accession | GCA_001423805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001423805.1 [NCBI] |
| BioSample | SAMN04151737 [NCBI] |
| BioProject | PRJNA297956 [NCBI] |
| Submitter | Max Planck Institute for Plant Breeding Research |
| Submission Date | 2015-10-07T09:29:28.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LMPI01 |
| NCBI TaxID | 1736347 |
| Isolation Source | |
| Geo Location | Switzerland:Zurich |
