Genome Meta Information: Lactobacillus acidophilus DSM 20079 (GCA_001433895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001433895.1 | ||
| HOMD Taxon-ID | HMT-0529 | ||
| Species Name (in use by HOMD) | Lactobacillus acidophilus | ||
| Organism Name (as deposited) | HMT-529 Lactobacillus acidophilus DSM 20079 | ||
| Strain or Isolate | DSM 20079 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus acidophilus |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,954,043 (bp) | ||
| GC Percentage | 34.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/433/895/GCA_001433895.1_ASM143389v1 | ||
| CDS | 1877 | ||
| Genes | 1966 | ||
| mRNA | 1966 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 95.13 % | ||
| CheckM Contamination | 0.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143389v1 |
| GenBank Assembly Accession | GCA_001433895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001433895.1 [NCBI] |
| BioSample | SAMN02369388 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:46.893 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AZCS01 |
| NCBI TaxID | 1423717 |
| Isolation Source | |
| Geo Location | - |
