Genome Meta Information: Lentilactobacillus kisonensis DSM 19906 (GCA_001434135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001434135.1 | ||
| HOMD Taxon-ID | HMT-0424 | ||
| Species Name (in use by HOMD) | Lentilactobacillus kisonensis | ||
| Organism Name (as deposited) | HMT-424 Lentilactobacillus kisonensis DSM 19906 | ||
| Strain or Isolate | DSM 19906 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus; s__Lentilactobacillus kisonensis |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,006,215 (bp) | ||
| GC Percentage | 41.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/135/GCA_001434135.1_ASM143413v1 | ||
| CDS | 2758 | ||
| Genes | 2849 | ||
| mRNA | 2849 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.85 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143413v1 |
| GenBank Assembly Accession | GCA_001434135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001434135.1 [NCBI] |
| BioSample | SAMN02369458 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:50.496 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AZEB01 |
| NCBI TaxID | 1423766 |
| Isolation Source | non-salted pickle solution used in production of sunki (Japanese traditional fer |
| Geo Location | Japan |
