Genome Meta Information: Lactiplantibacillus plantarum CGMCC 1.2437 (GCA_001434175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001434175.1 | ||
| HOMD Taxon-ID | HMT-0861 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus plantarum | ||
| Organism Name (as deposited) | HMT-861 Lactiplantibacillus plantarum CGMCC 1.2437 | ||
| Strain or Isolate | CGMCC 1.2437 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus plantarum |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,208,905 (bp) | ||
| GC Percentage | 44.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/175/GCA_001434175.1_ASM143417v1 | ||
| CDS | 3006 | ||
| Genes | 3101 | ||
| mRNA | 3101 | ||
| misc RNA | 41 | ||
| rRNA | 2 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 1.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143417v1 |
| GenBank Assembly Accession | GCA_001434175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001434175.1 [NCBI] |
| BioSample | SAMN02369435 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:49.286 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AZEJ01 |
| NCBI TaxID | 525338 |
| Isolation Source | pickled cabbage |
| Geo Location | - |
