Genome Meta Information: Limosilactobacillus oris DSM 4864 (GCA_001434465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001434465.1 | ||
| HOMD Taxon-ID | HMT-0709 | ||
| Species Name (in use by HOMD) | Limosilactobacillus oris | ||
| Organism Name (as deposited) | HMT-709 Limosilactobacillus oris DSM 4864 | ||
| Strain or Isolate | DSM 4864 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus oris |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,031,774 (bp) | ||
| GC Percentage | 49.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/434/465/GCA_001434465.1_ASM143446v1 | ||
| CDS | 1925 | ||
| Genes | 2003 | ||
| mRNA | 2003 | ||
| misc RNA | 23 | ||
| rRNA | 2 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143446v1 |
| GenBank Assembly Accession | GCA_001434465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001434465.1 [NCBI] |
| BioSample | SAMN02369408 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:47.923 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AZGE01 |
| NCBI TaxID | 1423779 |
| Isolation Source | saliva |
| Geo Location | - |
