Genome Meta Information: Lactobacillus iners DSM 13335 (GCA_001435015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001435015.1 | ||
| HOMD Taxon-ID | HMT-0838 | ||
| Species Name (in use by HOMD) | Lactobacillus iners | ||
| Organism Name (as deposited) | HMT-838 Lactobacillus iners DSM 13335 | ||
| Strain or Isolate | DSM 13335 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus iners |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,267,657 (bp) | ||
| GC Percentage | 32.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/015/GCA_001435015.1_ASM143501v1 | ||
| CDS | 1189 | ||
| Genes | 1258 | ||
| mRNA | 1258 | ||
| misc RNA | 23 | ||
| rRNA | 4 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.97 % | ||
| CheckM Completeness | 98.01 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143501v1 |
| GenBank Assembly Accession | GCA_001435015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001435015.1 [NCBI] |
| BioSample | SAMN02369401 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:47.560 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AZET01 |
| NCBI TaxID | 525328 |
| Isolation Source | urine |
| Geo Location | Sweden |
