Taxon Table | Genome Table
Genome Meta Information:
Lactiplantibacillus
plantarum
DSM 16365 (GCA_001435215.1)
| HOMD Genome-ID |
GCA_001435215.1
|
| HOMD Taxon-ID |
HMT-0861
|
| Species Name (in use by HOMD) |
Lactiplantibacillus plantarum
|
| Organism Name (as deposited) |
HMT-861 Lactiplantibacillus plantarum DSM 16365
|
| Strain or Isolate |
DSM 16365
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;
s__Lactiplantibacillus plantarum |
| Sequencing Technology |
Illumina MiSeq; Illumina HiSeq
|
| Genome Coverage |
100
|
| Contigs |
Number of Contigs: 210
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,186,310 (bp) |
| GC Percentage |
45.03
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/215/GCA_001435215.1_ASM143521v1
|
| CDS |
2939
|
| Genes |
3010
|
| mRNA |
0
|
| misc RNA |
0
|
| rRNA |
4
|
| tRNA |
66
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.98 %
|
| CheckM Completeness |
99.35 %
|
| CheckM Contamination |
1.39 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM143521v1
|
| GenBank Assembly Accession |
GCA_001435215.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001435215.1
[NCBI]
|
| BioSample |
SAMN02369470
[NCBI]
|
| BioProject |
PRJNA222257
[NCBI]
|
| Submitter |
Shanghai Majorbio
|
| Submission Date |
2013-09-29T22:32:51.130
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
AZFR01
|
| NCBI TaxID |
1423831
|
| Isolation Source |
fermented cassava roots (fufu)
|
| Geo Location |
Nigeria
|
