Genome Meta Information: Lacticaseibacillus rhamnosus DSM 20021 (GCA_001435405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001435405.1 | ||
| HOMD Taxon-ID | HMT-0749 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus rhamnosus | ||
| Organism Name (as deposited) | HMT-749 Lacticaseibacillus rhamnosus DSM 20021 | ||
| Strain or Isolate | DSM 20021 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,949,099 (bp) | ||
| GC Percentage | 46.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/405/GCA_001435405.1_ASM143540v1 | ||
| CDS | 2721 | ||
| Genes | 2816 | ||
| mRNA | 2816 | ||
| misc RNA | 32 | ||
| rRNA | 7 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 0.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143540v1 |
| GenBank Assembly Accession | GCA_001435405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001435405.1 [NCBI] |
| BioSample | SAMN02369512 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:53.240 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AZCQ01 |
| NCBI TaxID | 1423797 |
| Isolation Source | - |
| Geo Location | - |
