Taxon Table | Genome Table
Genome Meta Information:
Limosilactobacillus
vaginalis
DSM 5837 (GCA_001435915.1)
| HOMD Genome-ID |
GCA_001435915.1
|
| HOMD Taxon-ID |
HMT-0051
|
| Species Name (in use by HOMD) |
Limosilactobacillus vaginalis
|
| Organism Name (as deposited) |
HMT-051 Limosilactobacillus vaginalis DSM 5837
|
| Strain or Isolate |
DSM 5837
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;
s__Limosilactobacillus vaginalis |
| Sequencing Technology |
Illumina MiSeq; Illumina HiSeq
|
| Genome Coverage |
100
|
| Contigs |
Number of Contigs: 149
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,787,468 (bp) |
| GC Percentage |
40.47
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/915/GCA_001435915.1_ASM143591v1
|
| CDS |
1738
|
| Genes |
1827
|
| mRNA |
1827
|
| misc RNA |
38
|
| rRNA |
3
|
| tRNA |
47
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.95 %
|
| CheckM Completeness |
99.35 %
|
| CheckM Contamination |
0.65 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM143591v1
|
| GenBank Assembly Accession |
GCA_001435915.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_001435915.1
[NCBI]
|
| BioSample |
SAMN02369417
[NCBI]
|
| BioProject |
PRJNA222257
[NCBI]
|
| Submitter |
Shanghai Majorbio
|
| Submission Date |
2013-09-29T22:32:48.380
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
AZGL01
|
| NCBI TaxID |
1423814
|
| Isolation Source |
vaginal swab from patient with trichomoniasis
|
| Geo Location |
-
|
