Genome Meta Information: Ligilactobacillus salivarius DSM 20555 (GCA_001435955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001435955.1 | ||
| HOMD Taxon-ID | HMT-0756 | ||
| Species Name (in use by HOMD) | Ligilactobacillus salivarius | ||
| Organism Name (as deposited) | HMT-756 Ligilactobacillus salivarius DSM 20555 | ||
| Strain or Isolate | DSM 20555 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus; s__Ligilactobacillus salivarius |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,982,601 (bp) | ||
| GC Percentage | 32.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/435/955/GCA_001435955.1_ASM143595v1 | ||
| CDS | 1920 | ||
| Genes | 1988 | ||
| mRNA | 1988 | ||
| misc RNA | 38 | ||
| rRNA | 4 | ||
| tRNA | 25 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 97.98 % | ||
| CheckM Contamination | 0.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143595v1 |
| GenBank Assembly Accession | GCA_001435955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001435955.1 [NCBI] |
| BioSample | SAMN02369414 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:48.240 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | AYYT01 |
| NCBI TaxID | 1423799 |
| Isolation Source | saliva |
| Geo Location | - |
