Genome Meta Information: Lentilactobacillus rapi DSM 19907 (GCA_001436255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001436255.1 | ||
| HOMD Taxon-ID | HMT-0884 | ||
| Species Name (in use by HOMD) | Lentilactobacillus rapi | ||
| Organism Name (as deposited) | HMT-884 Lentilactobacillus rapi DSM 19907 | ||
| Strain or Isolate | DSM 19907 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus; s__Lentilactobacillus rapi |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,854,844 (bp) | ||
| GC Percentage | 42.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/255/GCA_001436255.1_ASM143625v1 | ||
| CDS | 2644 | ||
| Genes | 2748 | ||
| mRNA | 2748 | ||
| misc RNA | 44 | ||
| rRNA | 3 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143625v1 |
| GenBank Assembly Accession | GCA_001436255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001436255.1 [NCBI] |
| BioSample | SAMN02369472 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:51.236 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AZEI01 |
| NCBI TaxID | 1423795 |
| Isolation Source | non-salted pickle solution used in production of sunki (Japanese traditional fer |
| Geo Location | Japan |
