Genome Meta Information: Lactobacillus jensenii DSM 20557 (GCA_001436455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001436455.1 | ||
| HOMD Taxon-ID | HMT-0839 | ||
| Species Name (in use by HOMD) | Lactobacillus jensenii | ||
| Organism Name (as deposited) | HMT-839 Lactobacillus jensenii DSM 20557 | ||
| Strain or Isolate | DSM 20557 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus jensenii |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,610,627 (bp) | ||
| GC Percentage | 34.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/436/455/GCA_001436455.1_ASM143645v1 | ||
| CDS | 1478 | ||
| Genes | 1533 | ||
| mRNA | 1533 | ||
| misc RNA | 18 | ||
| rRNA | 3 | ||
| tRNA | 33 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.39 % | ||
| CheckM Contamination | 2.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM143645v1 |
| GenBank Assembly Accession | GCA_001436455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001436455.1 [NCBI] |
| BioSample | SAMN02369404 [NCBI] |
| BioProject | PRJNA222257 [NCBI] |
| Submitter | Shanghai Majorbio |
| Submission Date | 2013-09-29T22:32:47.730 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | AYYU01 |
| NCBI TaxID | 1423762 |
| Isolation Source | vaginal discharge |
| Geo Location | - |
