Genome Meta Information: Schaalia odontolytica XH001 (GCA_001462375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001462375.1 | ||
| HOMD Taxon-ID | HMT-0701 | ||
| Species Name (in use by HOMD) | Schaalia odontolytica | ||
| Organism Name (as deposited) | HMT-701 Schaalia odontolytica XH001 | ||
| Strain or Isolate | XH001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia odontolytica_C |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 20 | ||
| Contigs |
|
||
| Total Sequence Length | 2,336,123 (bp) | ||
| GC Percentage | 65.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/462/375/GCA_001462375.1_ASM146237v1 | ||
| CDS | 1976 | ||
| Genes | 2041 | ||
| mRNA | 2041 | ||
| misc RNA | 9 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.44 % | ||
| CheckM Completeness | 94.18 % | ||
| CheckM Contamination | 2.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM146237v1 |
| GenBank Assembly Accession | GCA_001462375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001462375.1 [NCBI] |
| BioSample | SAMN04166493 [NCBI] |
| BioProject | PRJNA298751 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2015-10-14T14:12:13.000 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LLVT01 |
| NCBI TaxID | 1660 |
| Isolation Source | oral cavity |
| Geo Location | USA: Los Angeles |
