Genome Meta Information: Staphylococcus capitis FDAARGOS_173 (GCA_001471555.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001471555.2 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis FDAARGOS_173 | ||
| Strain or Isolate | FDAARGOS_173 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 598 | ||
| Contigs |
|
||
| Total Sequence Length | 2,602,552 (bp) | ||
| GC Percentage | 32.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/471/555/GCA_001471555.2_ASM147155v2 | ||
| CDS | 2480 | ||
| Genes | 2610 | ||
| mRNA | 2610 | ||
| misc RNA | 48 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.9 % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM147155v2 |
| GenBank Assembly Accession | GCA_001471555.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001471555.2 [NCBI] |
| BioSample | SAMN03996314 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2015-08-17T07:15:17.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LORZ02 |
| NCBI TaxID | 29388 |
| Isolation Source | CVP blood |
| Geo Location | USA: DC |
