Genome Meta Information: Listeria monocytogenes Lm 3163 (GCA_001483405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001483405.1 | ||
| HOMD Taxon-ID | HMT-0825 | ||
| Species Name (in use by HOMD) | Listeria monocytogenes | ||
| Organism Name (as deposited) | HMT-825 Listeria monocytogenes Lm 3163 | ||
| Strain or Isolate | Lm 3163 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria; s__Listeria monocytogenes |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,927,751 (bp) | ||
| GC Percentage | 38.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/483/405/GCA_001483405.1_ASM148340v1 | ||
| CDS | 2840 | ||
| Genes | 3053 | ||
| mRNA | 3053 | ||
| misc RNA | 127 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.94 % | ||
| CheckM Completeness | 99.17 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM148340v1 |
| GenBank Assembly Accession | GCA_001483405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001483405.1 [NCBI] |
| BioSample | SAMN04348333 [NCBI] |
| BioProject | PRJNA306210 [NCBI] |
| Submitter | University of Zurich, Vetsuisse Faculty |
| Submission Date | 2015-12-17T04:23:03.231 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1639 |
| Isolation Source | blood |
| Geo Location | Switzerland |
