Genome Meta Information: Kocuria palustris CD07_3 (GCA_001483775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001483775.1 | ||
| HOMD Taxon-ID | HMT-0084 | ||
| Species Name (in use by HOMD) | Kocuria palustris | ||
| Organism Name (as deposited) | HMT-084 Kocuria palustris CD07_3 | ||
| Strain or Isolate | CD07_3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria palustris |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,833,425 (bp) | ||
| GC Percentage | 70.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/483/775/GCA_001483775.1_ASM148377v1 | ||
| CDS | 2454 | ||
| Genes | 2530 | ||
| mRNA | 2530 | ||
| misc RNA | 22 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.04 % | ||
| CheckM Completeness | 98.79 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM148377v1 |
| GenBank Assembly Accession | GCA_001483775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001483775.1 [NCBI] |
| BioSample | SAMN04376006 [NCBI] |
| BioProject | PRJNA307136 [NCBI] |
| Submitter | Institute of Microbial Technology |
| Submission Date | 2015-12-29T01:29:02.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LQBJ01 |
| NCBI TaxID | 71999 |
| Isolation Source | Duodenal mucosa of Celiac disease patient |
| Geo Location | India: Chandigarh, PGIMER |
