Genome Meta Information: Pseudomonas aeruginosa H47921 (GCA_001516345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001516345.1 | ||
| HOMD Taxon-ID | HMT-0536 | ||
| Species Name (in use by HOMD) | Pseudomonas aeruginosa | ||
| Organism Name (as deposited) | HMT-536 Pseudomonas aeruginosa H47921 | ||
| Strain or Isolate | H47921 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas; s__Pseudomonas aeruginosa |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 87.35 | ||
| Contigs |
|
||
| Total Sequence Length | 6,836,415 (bp) | ||
| GC Percentage | 66.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/516/345/GCA_001516345.1_ASM151634v1 | ||
| CDS | 6269 | ||
| Genes | 6458 | ||
| mRNA | 6458 | ||
| misc RNA | 104 | ||
| rRNA | 12 | ||
| tRNA | 72 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.31 % | ||
| CheckM Completeness | 99.23 % | ||
| CheckM Contamination | 1.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM151634v1 |
| GenBank Assembly Accession | GCA_001516345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001516345.1 [NCBI] |
| BioSample | SAMN02894353 [NCBI] |
| BioProject | PRJNA253624 [NCBI] |
| Submitter | MSKCC |
| Submission Date | 2014-06-27T14:34:57.983 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 287 |
| Isolation Source | missing |
| Geo Location | USA: New York, NY |
