Genome Meta Information: Tannerella forsythia 3313 (GCA_001547875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001547875.1 | ||
| HOMD Taxon-ID | HMT-0613 | ||
| Species Name (in use by HOMD) | Tannerella forsythia | ||
| Organism Name (as deposited) | HMT-613 Tannerella forsythia 3313 | ||
| Strain or Isolate | 3313 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella; s__Tannerella forsythia |
||
| Sequencing Technology | Sanger; Roche 454_; Illumina GAII | ||
| Genome Coverage | 21 | ||
| Contigs |
|
||
| Total Sequence Length | 3,350,939 (bp) | ||
| GC Percentage | 47.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/547/875/GCA_001547875.1_ASM154787v1 | ||
| CDS | 2877 | ||
| Genes | 2951 | ||
| mRNA | 2951 | ||
| misc RNA | 21 | ||
| rRNA | 6 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.62 % | ||
| CheckM Completeness | 96.02 % | ||
| CheckM Contamination | 4.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM154787v1 |
| GenBank Assembly Accession | GCA_001547875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001547875.1 [NCBI] |
| BioSample | SAMD00061004 [NCBI] |
| BioProject | PRJDB1007 [NCBI] |
| Submitter | Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Section of Bacterial Phathogenesis |
| Submission Date | 2016-09-28T01:01:34.140 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1307832 |
| Isolation Source | |
| Geo Location | |
