Genome Meta Information: Porphyromonas pasteri KA00683 (GCA_001553215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553215.1 | ||
| HOMD Taxon-ID | HMT-0279 | ||
| Species Name (in use by HOMD) | Porphyromonas pasteri | ||
| Organism Name (as deposited) | HMT-279 Porphyromonas pasteri KA00683 | ||
| Strain or Isolate | KA00683 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas pasteri |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 122 | ||
| Contigs |
|
||
| Total Sequence Length | 2,355,383 (bp) | ||
| GC Percentage | 55.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/215/GCA_001553215.1_ASM155321v1 | ||
| CDS | 1831 | ||
| Genes | 1889 | ||
| mRNA | 1889 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.19 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.87 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155321v1 |
| GenBank Assembly Accession | GCA_001553215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553215.1 [NCBI] |
| BioSample | SAMN03854412 [NCBI] |
| BioProject | PRJNA272077 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2015-07-10T14:05:16.713 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LSDK01 |
| NCBI TaxID | 322095 |
| Isolation Source | vagina |
| Geo Location | |
