Genome Meta Information: Capnocytophaga haemolytica CCUG 32990 (GCA_001553545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553545.1 | ||
| HOMD Taxon-ID | HMT-0627 | ||
| Species Name (in use by HOMD) | Capnocytophaga haemolytica | ||
| Organism Name (as deposited) | HMT-627 Capnocytophaga haemolytica CCUG 32990 | ||
| Strain or Isolate | CCUG 32990 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga haemolytica |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 87 | ||
| Contigs |
|
||
| Total Sequence Length | 2,688,484 (bp) | ||
| GC Percentage | 44.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/545/GCA_001553545.1_ASM155354v1 | ||
| CDS | 2424 | ||
| Genes | 2485 | ||
| mRNA | 2485 | ||
| misc RNA | 3 | ||
| rRNA | 8 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.48 % | ||
| CheckM Contamination | 2.92 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155354v1 |
| GenBank Assembly Accession | GCA_001553545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553545.1 [NCBI] |
| BioSample | SAMN04435862 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-01-22T19:16:05.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 45243 |
| Isolation Source | supragingival dental plaque |
| Geo Location | Japan: Okayama |
