Genome Meta Information: Desulfomicrobium orale DSM 12838 (GCA_001553625.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001553625.1 | ||
| HOMD Taxon-ID | HMT-0703 | ||
| Species Name (in use by HOMD) | Desulfomicrobium orale | ||
| Organism Name (as deposited) | HMT-703 Desulfomicrobium orale DSM 12838 | ||
| Strain or Isolate | DSM 12838 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium; s__Desulfomicrobium orale |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 313 | ||
| Contigs |
|
||
| Total Sequence Length | 2,783,374 (bp) | ||
| GC Percentage | 58.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/553/625/GCA_001553625.1_ASM155362v1 | ||
| CDS | 2553 | ||
| Genes | 2631 | ||
| mRNA | 2631 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 63.65 % | ||
| CheckM Contamination | 12.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM155362v1 |
| GenBank Assembly Accession | GCA_001553625.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001553625.1 [NCBI] |
| BioSample | SAMN04435861 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2016-01-22T19:16:04.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 888061 |
| Isolation Source | subgingival dental plaque |
| Geo Location | Netherlands |
