Genome Meta Information: Prevotella bivia GED7880 (GCA_001574405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001574405.1 | ||
| HOMD Taxon-ID | HMT-0556 | ||
| Species Name (in use by HOMD) | Prevotella bivia | ||
| Organism Name (as deposited) | HMT-556 Prevotella bivia GED7880 | ||
| Strain or Isolate | GED7880 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella bivia |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 96 | ||
| Contigs |
|
||
| Total Sequence Length | 2,579,172 (bp) | ||
| GC Percentage | 39.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/574/405/GCA_001574405.1_ASM157440v1 | ||
| CDS | 2230 | ||
| Genes | 2288 | ||
| mRNA | 2288 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.94 % | ||
| CheckM Completeness | 89.42 % | ||
| CheckM Contamination | 5.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM157440v1 |
| GenBank Assembly Accession | GCA_001574405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001574405.1 [NCBI] |
| BioSample | SAMN03854509 [NCBI] |
| BioProject | PRJNA272094 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2015-07-10T16:05:05.900 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTAG01 |
| NCBI TaxID | 28125 |
| Isolation Source | Vagina |
| Geo Location | |
