Genome Meta Information: Aggregatibacter actinomycetemcomitans VT1169 (GCA_001594245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001594245.1 | ||
| HOMD Taxon-ID | HMT-0531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans VT1169 | ||
| Strain or Isolate | VT1169 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 350 | ||
| Contigs |
|
||
| Total Sequence Length | 2,129,092 (bp) | ||
| GC Percentage | 44.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/594/245/GCA_001594245.1_ASM159424v1 | ||
| CDS | 2022 | ||
| Genes | 2154 | ||
| mRNA | 2154 | ||
| misc RNA | 58 | ||
| rRNA | 19 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.1 % | ||
| CheckM Completeness | 99.05 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM159424v1 |
| GenBank Assembly Accession | GCA_001594245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001594245.1 [NCBI] |
| BioSample | SAMN03799080 [NCBI] |
| BioProject | PRJNA288376 [NCBI] |
| Submitter | The University of Texas at Austin |
| Submission Date | 2015-06-27T18:21:36.120 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 714 |
| Isolation Source | missing |
| Geo Location | missing |
