Genome Meta Information: Staphylococcus aureus ST20130939 (GCA_001611425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001611425.1 | ||
| HOMD Taxon-ID | HMT-0550 | ||
| Species Name (in use by HOMD) | Staphylococcus aureus | ||
| Organism Name (as deposited) | HMT-550 Staphylococcus aureus ST20130939 | ||
| Strain or Isolate | ST20130939 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus aureus |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 66 | ||
| Contigs |
|
||
| Total Sequence Length | 2,746,829 (bp) | ||
| GC Percentage | 32.86 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/611/425/GCA_001611425.1_ASM161142v1 | ||
| CDS | 2508 | ||
| Genes | 2708 | ||
| mRNA | 2708 | ||
| misc RNA | 118 | ||
| rRNA | 19 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.07 % | ||
| CheckM Completeness | 98.33 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM161142v1 |
| GenBank Assembly Accession | GCA_001611425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001611425.1 [NCBI] |
| BioSample | SAMN04166389 [NCBI] |
| BioProject | PRJNA298748 [NCBI] |
| Submitter | LNCC |
| Submission Date | 2015-10-14T13:52:17.484 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1280 |
| Isolation Source | 26-year old man with an implant associated osteitis |
| Geo Location | France |
