Genome Meta Information: Arthrospira platensis YZ (GCA_001611905.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001611905.1 | ||
| HOMD Taxon-ID | HMT-0229 | ||
| Species Name (in use by HOMD) | Arthrospira platensis | ||
| Organism Name (as deposited) | HMT-229 Arthrospira platensis YZ | ||
| Strain or Isolate | YZ | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira; s__Limnospira platensis |
||
| Sequencing Technology | ABI3730; Illumina GAIIx | ||
| Genome Coverage | 86 | ||
| Contigs |
|
||
| Total Sequence Length | 6,520,772 (bp) | ||
| GC Percentage | 44.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/611/905/GCA_001611905.1_ASM161190v1 | ||
| CDS | 6246 | ||
| Genes | 6667 | ||
| mRNA | 6667 | ||
| misc RNA | 368 | ||
| rRNA | 6 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.24 % | ||
| CheckM Completeness | 94.4 % | ||
| CheckM Contamination | 2.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM161190v1 |
| GenBank Assembly Accession | GCA_001611905.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001611905.1 [NCBI] |
| BioSample | SAMN04192332 [NCBI] |
| BioProject | PRJNA299041 [NCBI] |
| Submitter | Wenzhou Medical University |
| Submission Date | 2015-10-17T09:41:06.000 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1738638 |
| Isolation Source | |
| Geo Location | China: Lijiang, Chenghai Lake |
