Genome Meta Information: Neisseria flavescens CD-NF2 (GCA_001618065.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001618065.1 | ||
| HOMD Taxon-ID | HMT-0610 | ||
| Species Name (in use by HOMD) | Neisseria flavescens | ||
| Organism Name (as deposited) | HMT-610 Neisseria flavescens CD-NF2 | ||
| Strain or Isolate | CD-NF2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria flavescens_A |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 21 | ||
| Contigs |
|
||
| Total Sequence Length | 2,345,024 (bp) | ||
| GC Percentage | 48.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/065/GCA_001618065.1_ASM161806v1 | ||
| CDS | 2289 | ||
| Genes | 2356 | ||
| mRNA | 2356 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.54 % | ||
| CheckM Completeness | 91.68 % | ||
| CheckM Contamination | 2.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM161806v1 |
| GenBank Assembly Accession | GCA_001618065.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001618065.1 [NCBI] |
| BioSample | SAMN03329001 [NCBI] |
| BioProject | PRJNA274665 [NCBI] |
| Submitter | CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli |
| Submission Date | 2015-02-04T10:23:48.536 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LAEI01 |
| NCBI TaxID | 484 |
| Isolation Source | duodenal mucosa |
| Geo Location | Italy: Naples |
