Genome Meta Information: Neisseria flavescens CD-NF3 (GCA_001618075.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001618075.1 | ||
| HOMD Taxon-ID | HMT-0610 | ||
| Species Name (in use by HOMD) | Neisseria flavescens | ||
| Organism Name (as deposited) | HMT-610 Neisseria flavescens CD-NF3 | ||
| Strain or Isolate | CD-NF3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria flavescens_D |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 24 | ||
| Contigs |
|
||
| Total Sequence Length | 2,333,017 (bp) | ||
| GC Percentage | 48.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/075/GCA_001618075.1_ASM161807v1 | ||
| CDS | 2329 | ||
| Genes | 2402 | ||
| mRNA | 2402 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.49 % | ||
| CheckM Completeness | 91.46 % | ||
| CheckM Contamination | 2.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM161807v1 |
| GenBank Assembly Accession | GCA_001618075.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001618075.1 [NCBI] |
| BioSample | SAMN03329002 [NCBI] |
| BioProject | PRJNA274665 [NCBI] |
| Submitter | CEINGE Biotecnologie Avanzate s.c.a r.l., via Gaetano Salvatore 486-80145-Napoli |
| Submission Date | 2015-02-04T10:26:48.883 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LAEJ01 |
| NCBI TaxID | 484 |
| Isolation Source | duodenal mucosa |
| Geo Location | Italy: Naples |
