Genome Meta Information: Limosilactobacillus reuteri ZLR003 (GCA_001618905.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001618905.1 | ||
| HOMD Taxon-ID | HMT-0818 | ||
| Species Name (in use by HOMD) | Limosilactobacillus reuteri | ||
| Organism Name (as deposited) | HMT-818 Limosilactobacillus reuteri ZLR003 | ||
| Strain or Isolate | ZLR003 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus suis |
||
| Sequencing Technology | Illumina Hiseq; PacBio RSII | ||
| Genome Coverage | 1231 | ||
| Contigs |
|
||
| Total Sequence Length | 2,234,097 (bp) | ||
| GC Percentage | 38.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/618/905/GCA_001618905.1_ASM161890v1 | ||
| CDS | 2176 | ||
| Genes | 2309 | ||
| mRNA | 2309 | ||
| misc RNA | 45 | ||
| rRNA | 18 | ||
| tRNA | 69 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.59 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 0.98 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM161890v1 |
| GenBank Assembly Accession | GCA_001618905.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001618905.1 [NCBI] |
| BioSample | SAMN03879966 [NCBI] |
| BioProject | PRJNA290298 [NCBI] |
| Submitter | Institute of Animal Husbandry and Veterinary Medicine |
| Submission Date | 2015-07-19T23:08:17.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1598 |
| Isolation Source | caecum mucosa from a healthy weaned piglet |
| Geo Location | China: Beijing |
