Genome Meta Information: Phocaeicola dorei CL03T12C01 (GCA_001640865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001640865.1 | ||
| HOMD Taxon-ID | HMT-0975 | ||
| Species Name (in use by HOMD) | Phocaeicola dorei | ||
| Organism Name (as deposited) | HMT-975 Phocaeicola dorei CL03T12C01 | ||
| Strain or Isolate | CL03T12C01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola dorei |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 193.23 | ||
| Contigs |
|
||
| Total Sequence Length | 5,310,365 (bp) | ||
| GC Percentage | 41.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/640/865/GCA_001640865.1_ASM164086v1 | ||
| CDS | 4349 | ||
| Genes | 4481 | ||
| mRNA | 4481 | ||
| misc RNA | 21 | ||
| rRNA | 21 | ||
| tRNA | 89 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.32 % | ||
| CheckM Completeness | 98.76 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM164086v1 |
| GenBank Assembly Accession | GCA_001640865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001640865.1 [NCBI] |
| BioSample | SAMN03737480 [NCBI] |
| BioProject | PRJNA285067 [NCBI] |
| Submitter | University of Florida |
| Submission Date | 2015-05-27T12:28:20.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 997877 |
| Isolation Source | |
| Geo Location | not applicable |
