Genome Meta Information: Staphylococcus capitis H36 (GCA_001650475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001650475.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis H36 | ||
| Strain or Isolate | H36 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 258 | ||
| Contigs |
|
||
| Total Sequence Length | 2,418,436 (bp) | ||
| GC Percentage | 32.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/650/475/GCA_001650475.1_ASM165047v1 | ||
| CDS | 2341 | ||
| Genes | 2468 | ||
| mRNA | 2468 | ||
| misc RNA | 55 | ||
| rRNA | 10 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.82 % | ||
| CheckM Completeness | 98.4 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM165047v1 |
| GenBank Assembly Accession | GCA_001650475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001650475.1 [NCBI] |
| BioSample | SAMN04621681 [NCBI] |
| BioProject | PRJNA317600 [NCBI] |
| Submitter | UC Berkeley |
| Submission Date | 2016-04-06T19:58:02.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LWCQ01 |
| NCBI TaxID | 29388 |
| Isolation Source | air |
| Geo Location | USA: California |
