Genome Meta Information: Peptidiphaga gingivicola BA112 (GCA_001652275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001652275.1 | ||
| HOMD Taxon-ID | HMT-0848 | ||
| Species Name (in use by HOMD) | Peptidiphaga gingivicola | ||
| Organism Name (as deposited) | HMT-848 Peptidiphaga gingivicola BA112 | ||
| Strain or Isolate | BA112 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Peptidiphaga; s__Peptidiphaga gingivicola |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1355 | ||
| Contigs |
|
||
| Total Sequence Length | 2,524,828 (bp) | ||
| GC Percentage | 64.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/652/275/GCA_001652275.1_ASM165227v1 | ||
| CDS | 2060 | ||
| Genes | 2123 | ||
| mRNA | 2123 | ||
| misc RNA | 5 | ||
| rRNA | 9 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM165227v1 |
| GenBank Assembly Accession | GCA_001652275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001652275.1 [NCBI] |
| BioSample | SAMN04600420 [NCBI] |
| BioProject | PRJNA317166 [NCBI] |
| Submitter | The Ohio State University |
| Submission Date | 2016-04-01T14:25:03.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LVZK01 |
| NCBI TaxID | 2741497 |
| Isolation Source | subgingival plaque |
| Geo Location | USA: Columbus, Ohio |
