Genome Meta Information: Mycobacterium leprae 3125609 (GCA_001653495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001653495.1 | ||
| HOMD Taxon-ID | HMT-0823 | ||
| Species Name (in use by HOMD) | Mycobacterium leprae | ||
| Organism Name (as deposited) | HMT-823 Mycobacterium leprae 3125609 | ||
| Strain or Isolate | 3125609 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium; s__Mycobacterium leprae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 580 | ||
| Contigs |
|
||
| Total Sequence Length | 3,266,420 (bp) | ||
| GC Percentage | 57.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/653/495/GCA_001653495.1_ASM165349v1 | ||
| CDS | 3946 | ||
| Genes | 4017 | ||
| mRNA | 4017 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.61 % | ||
| CheckM Contamination | 0.64 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM165349v1 |
| GenBank Assembly Accession | GCA_001653495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001653495.1 [NCBI] |
| BioSample | SAMN05172957 [NCBI] |
| BioProject | PRJNA322730 [NCBI] |
| Submitter | Eurofins Genomics India Pvt Ltd. |
| Submission Date | 2016-05-25T02:26:02.900 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LYPH01 |
| NCBI TaxID | 1297123 |
| Isolation Source | patient |
| Geo Location | NA |
