Genome Meta Information: Corynebacterium pseudodiphtheriticum EPI-003-04-2554_SCH2473622 (GCA_001665955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001665955.1 | ||
| HOMD Taxon-ID | HMT-0060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum EPI-003-04-2554_SCH2473622 | ||
| Strain or Isolate | EPI-003-04-2554_SCH2473622 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | Illumina NextSeq 500 | ||
| Genome Coverage | 188.55 | ||
| Contigs |
|
||
| Total Sequence Length | 2,366,960 (bp) | ||
| GC Percentage | 55.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/665/955/GCA_001665955.1_ASM166595v1 | ||
| CDS | 2137 | ||
| Genes | 2193 | ||
| mRNA | 2193 | ||
| misc RNA | 6 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.18 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM166595v1 |
| GenBank Assembly Accession | GCA_001665955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001665955.1 [NCBI] |
| BioSample | SAMN04696134 [NCBI] |
| BioProject | PRJNA305922 [NCBI] |
| Submitter | JCVI |
| Submission Date | 2016-04-12T16:08:10.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LZMN01 |
| NCBI TaxID | 1834153 |
| Isolation Source | Unknown |
| Geo Location | South Africa |
