Genome Meta Information: Mesorhizobium japonicum R7ANS::ICEMcbSym1271 (GCA_001671545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001671545.1 | ||
| HOMD Taxon-ID | HMT-0659 | ||
| Species Name (in use by HOMD) | Mesorhizobium japonicum | ||
| Organism Name (as deposited) | HMT-659 Mesorhizobium japonicum R7ANS | ||
| Strain or Isolate | R7ANS::ICEMcbSym1271 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium; s__Mesorhizobium japonicum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 15 | ||
| Contigs |
|
||
| Total Sequence Length | 6,508,905 (bp) | ||
| GC Percentage | 62.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/671/545/GCA_001671545.1_ASM167154v1 | ||
| CDS | 6235 | ||
| Genes | 6350 | ||
| mRNA | 6350 | ||
| misc RNA | 50 | ||
| rRNA | 6 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.91 % | ||
| CheckM Completeness | 99.01 % | ||
| CheckM Contamination | 0.75 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM167154v1 |
| GenBank Assembly Accession | GCA_001671545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001671545.1 [NCBI] |
| BioSample | SAMN05241054 [NCBI] |
| BioProject | PRJNA325577 [NCBI] |
| Submitter | Curtin University |
| Submission Date | 2016-06-14T05:11:03.500 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LZTK01 |
| NCBI TaxID | 381 |
| Isolation Source | conjugation and plant nodule |
| Geo Location | Australia:Perth |
