Genome Meta Information: Moraxella catarrhalis CCUG 18283 (GCA_001679105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001679105.1 | ||
| HOMD Taxon-ID | HMT-0833 | ||
| Species Name (in use by HOMD) | Moraxella catarrhalis | ||
| Organism Name (as deposited) | HMT-833 Moraxella catarrhalis CCUG 18283 | ||
| Strain or Isolate | CCUG 18283 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella; s__Moraxella catarrhalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 93.5 | ||
| Contigs |
|
||
| Total Sequence Length | 1,909,123 (bp) | ||
| GC Percentage | 41.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/679/105/GCA_001679105.1_ASM167910v1 | ||
| CDS | 1759 | ||
| Genes | 1816 | ||
| mRNA | 1816 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.24 % | ||
| CheckM Completeness | 99.08 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM167910v1 |
| GenBank Assembly Accession | GCA_001679105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001679105.1 [NCBI] |
| BioSample | SAMN05213945 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2016-06-08T04:02:05.456 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LZDJ01 |
| NCBI TaxID | 480 |
| Isolation Source | Human nasopharynx |
| Geo Location | Sweden:Lund |
