Genome Meta Information: Brochothrix thermosphacta DSM 20171 (GCA_001715655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001715655.1 | ||
| HOMD Taxon-ID | HMT-0241 | ||
| Species Name (in use by HOMD) | Brochothrix thermosphacta | ||
| Organism Name (as deposited) | HMT-241 Brochothrix thermosphacta DSM 20171 | ||
| Strain or Isolate | DSM 20171 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Brochothrix; s__Brochothrix thermosphacta |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 80 | ||
| Contigs |
|
||
| Total Sequence Length | 2,494,302 (bp) | ||
| GC Percentage | 36.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/715/655/GCA_001715655.1_ASM171565v1 | ||
| CDS | 2408 | ||
| Genes | 2551 | ||
| mRNA | 2551 | ||
| misc RNA | 50 | ||
| rRNA | 10 | ||
| tRNA | 82 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.92 % | ||
| CheckM Completeness | 98.98 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM171565v1 |
| GenBank Assembly Accession | GCA_001715655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001715655.1 [NCBI] |
| BioSample | SAMN05567448 [NCBI] |
| BioProject | PRJNA338887 [NCBI] |
| Submitter | CSIRO Agriculture and Food; Food Safety and Stability Group |
| Submission Date | 2016-08-12T01:50:06.886 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MDLK01 |
| NCBI TaxID | 1121126 |
| Isolation Source | pork sausage |
| Geo Location | not applicable |
