Genome Meta Information: Lacticaseibacillus rhamnosus LRB (GCA_001721925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001721925.1 | ||
| HOMD Taxon-ID | HMT-0749 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus rhamnosus | ||
| Organism Name (as deposited) | HMT-749 Lacticaseibacillus rhamnosus LRB | ||
| Strain or Isolate | LRB | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 16.11 | ||
| Contigs |
|
||
| Total Sequence Length | 2,934,954 (bp) | ||
| GC Percentage | 46.78 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/721/925/GCA_001721925.1_ASM172192v1 | ||
| CDS | 2880 | ||
| Genes | 2986 | ||
| mRNA | 2986 | ||
| misc RNA | 31 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.56 % | ||
| CheckM Completeness | 92.53 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM172192v1 |
| GenBank Assembly Accession | GCA_001721925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001721925.1 [NCBI] |
| BioSample | SAMN05513711 [NCBI] |
| BioProject | PRJNA337919 [NCBI] |
| Submitter | KUMC |
| Submission Date | 2016-08-05T10:05:03.250 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47715 |
| Isolation Source | milk tooth |
| Geo Location | USA: Kansas |
