Genome Meta Information: Microbacterium ginsengisoli na (GCA_001725695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001725695.1 | ||
| HOMD Taxon-ID | HMT-0185 | ||
| Species Name (in use by HOMD) | Microbacterium ginsengisoli | ||
| Organism Name (as deposited) | HMT-185 Microbacterium ginsengisoli na | ||
| Strain or Isolate | na | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium; s__Microbacterium ginsengisoli |
||
| Sequencing Technology | Illumina HiSeq2000 | ||
| Genome Coverage | 20.55 | ||
| Contigs |
|
||
| Total Sequence Length | 2,638,424 (bp) | ||
| GC Percentage | 70.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/725/695/GCA_001725695.1_ASM172569v1 | ||
| CDS | 2530 | ||
| Genes | 2585 | ||
| mRNA | 2585 | ||
| misc RNA | 7 | ||
| rRNA | 0 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 93.08 % | ||
| CheckM Contamination | 1.66 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM172569v1 |
| GenBank Assembly Accession | GCA_001725695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001725695.1 [NCBI] |
| BioSample | SAMN03652503 [NCBI] |
| BioProject | PRJNA279279 [NCBI] |
| Submitter | Banfield Lab, University of California, Berkeley |
| Submission Date | 2015-05-11T15:09:33.000 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MEGA01 |
| NCBI TaxID | 1660116 |
| Isolation Source | Thiocyanate bioreactor |
| Geo Location | South Africa: University of Ca |
