Genome Meta Information: Schaalia hongkongensis HKU8 (GCA_001746855.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001746855.1 | ||
| HOMD Taxon-ID | HMT-0178 | ||
| Species Name (in use by HOMD) | Schaalia hongkongensis | ||
| Organism Name (as deposited) | HMT-178 Schaalia hongkongensis HKU8 | ||
| Strain or Isolate | HKU8 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia hongkongensis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 230 | ||
| Contigs |
|
||
| Total Sequence Length | 2,141,493 (bp) | ||
| GC Percentage | 71.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/746/855/GCA_001746855.1_ASM174685v1 | ||
| CDS | 1814 | ||
| Genes | 1867 | ||
| mRNA | 1867 | ||
| misc RNA | 6 | ||
| rRNA | 2 | ||
| tRNA | 45 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 72.43 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM174685v1 |
| GenBank Assembly Accession | GCA_001746855.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001746855.1 [NCBI] |
| BioSample | SAMN05786934 [NCBI] |
| BioProject | PRJNA343394 [NCBI] |
| Submitter | HebeiProvincialInstitute |
| Submission Date | 2016-09-18T22:44:03.566 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 178339 |
| Isolation Source | |
| Geo Location | China: Shijiazhuang |
