Genome Meta Information: Aerococcus viridans HMSC10H05 (GCA_001806975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001806975.1 | ||
| HOMD Taxon-ID | HMT-0312 | ||
| Species Name (in use by HOMD) | Aerococcus viridans | ||
| Organism Name (as deposited) | HMT-312 Aerococcus viridans HMSC10H05 | ||
| Strain or Isolate | HMSC10H05 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus; s__Aerococcus viridans_B |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 339 | ||
| Contigs |
|
||
| Total Sequence Length | 1,892,427 (bp) | ||
| GC Percentage | 37.19 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/806/975/GCA_001806975.1_ASM180697v1 | ||
| CDS | 1720 | ||
| Genes | 1794 | ||
| mRNA | 1794 | ||
| misc RNA | 34 | ||
| rRNA | 4 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 93.44 % | ||
| CheckM Contamination | 3.94 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM180697v1 |
| GenBank Assembly Accession | GCA_001806975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001806975.1 [NCBI] |
| BioSample | SAMN03604111 [NCBI] |
| BioProject | PRJNA269853 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2015-05-05T17:05:03.667 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTZN01 |
| NCBI TaxID | 1581084 |
| Isolation Source | urinary tract |
| Geo Location | |
