Genome Meta Information: Actinomyces oris HMSC08A09 (GCA_001807465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001807465.1 | ||
| HOMD Taxon-ID | HMT-0893 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-893 Actinomyces oris clade-893 HMSC08A09 | ||
| Strain or Isolate | HMSC08A09 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 162 | ||
| Contigs |
|
||
| Total Sequence Length | 3,046,742 (bp) | ||
| GC Percentage | 68.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/807/465/GCA_001807465.1_ASM180746v1 | ||
| CDS | 2515 | ||
| Genes | 2583 | ||
| mRNA | 2583 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.6 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM180746v1 |
| GenBank Assembly Accession | GCA_001807465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001807465.1 [NCBI] |
| BioSample | SAMN03434240 [NCBI] |
| BioProject | PRJNA269902 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2015-03-19T16:05:05.787 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LWNX01 |
| NCBI TaxID | 1581133 |
| Isolation Source | missing |
| Geo Location | |
