Genome Meta Information: Rothia mucilaginosa HMSC078H08 (GCA_001808955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001808955.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 HMSC078H08 | ||
| Strain or Isolate | HMSC078H08 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp001808955 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 173 | ||
| Contigs |
|
||
| Total Sequence Length | 2,312,383 (bp) | ||
| GC Percentage | 59.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/808/955/GCA_001808955.1_ASM180895v1 | ||
| CDS | 1758 | ||
| Genes | 1824 | ||
| mRNA | 1824 | ||
| misc RNA | 12 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM180895v1 |
| GenBank Assembly Accession | GCA_001808955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001808955.1 [NCBI] |
| BioSample | SAMN04456733 [NCBI] |
| BioProject | PRJNA296135 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-04T13:05:04.717 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTKQ01 |
| NCBI TaxID | 1715008 |
| Isolation Source | tracheal aspirate |
| Geo Location | |
