Genome Meta Information: Rothia dentocariosa HMSC058E10 (GCA_001809415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001809415.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa HMSC058E10 | ||
| Strain or Isolate | HMSC058E10 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 164 | ||
| Contigs |
|
||
| Total Sequence Length | 2,439,224 (bp) | ||
| GC Percentage | 53.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/809/415/GCA_001809415.1_ASM180941v1 | ||
| CDS | 2071 | ||
| Genes | 2139 | ||
| mRNA | 2139 | ||
| misc RNA | 12 | ||
| rRNA | 5 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.98 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM180941v1 |
| GenBank Assembly Accession | GCA_001809415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001809415.1 [NCBI] |
| BioSample | SAMN04477506 [NCBI] |
| BioProject | PRJNA296216 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-06T08:05:56.880 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTJT01 |
| NCBI TaxID | 1715088 |
| Isolation Source | bronchoalveolar lavage |
| Geo Location | |
