Genome Meta Information: Neisseria perflava HMSC058F07 (GCA_001810035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001810035.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava HMSC058F07 | ||
| Strain or Isolate | HMSC058F07 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria perflava |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 177 | ||
| Contigs |
|
||
| Total Sequence Length | 2,261,793 (bp) | ||
| GC Percentage | 49.27 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/810/035/GCA_001810035.1_ASM181003v1 | ||
| CDS | 2151 | ||
| Genes | 2220 | ||
| mRNA | 2220 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181003v1 |
| GenBank Assembly Accession | GCA_001810035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001810035.1 [NCBI] |
| BioSample | SAMN04477541 [NCBI] |
| BioProject | PRJNA296303 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-06T08:05:58.433 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTIN01 |
| NCBI TaxID | 1715175 |
| Isolation Source | throat |
| Geo Location | |
