Genome Meta Information: Neisseria perflava HMSC061E12 (GCA_001811365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_001811365.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava HMSC061E12 | ||
| Strain or Isolate | HMSC061E12 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria sp001838135 |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 179 | ||
| Contigs |
|
||
| Total Sequence Length | 2,229,188 (bp) | ||
| GC Percentage | 48.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/811/365/GCA_001811365.1_ASM181136v1 | ||
| CDS | 2060 | ||
| Genes | 2163 | ||
| mRNA | 2163 | ||
| misc RNA | 48 | ||
| rRNA | 3 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.23 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM181136v1 |
| GenBank Assembly Accession | GCA_001811365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_001811365.1 [NCBI] |
| BioSample | SAMN04477613 [NCBI] |
| BioProject | PRJNA299951 [NCBI] |
| Submitter | The Genome Institute at Washington University |
| Submission Date | 2016-02-06T08:06:01.890 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | LTGF01 |
| NCBI TaxID | 1739301 |
| Isolation Source | sputum |
| Geo Location | |
